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Quick Answer: Many chronic headaches — especially those starting at the base of the skull or behind the eyes — originate from your neck, not your brain. These cervicogenic and tension headaches respond remarkably well to physical therapy, including manual cervical mobilization, dry needling, and McKenzie-based exercises. Most of my patients see meaningful improvement within 3–6 visits.

If you’ve been dealing with recurring headaches in Salt Lake City and you’ve tried medications, chiropractors, and even MRIs without answers, there’s a good chance no one has properly assessed your neck. That’s where the problem usually lives — and it’s where the solution is, too.

I’m Dr. Emily Warren, a McKenzie-certified physical therapist with over 14 years of clinical experience. I treat headache patients regularly in my Cottonwood Heights clinic, and the pattern I see is almost always the same: months or years of headache medication, multiple doctor visits, and no one has done a thorough mechanical assessment of the cervical spine.

Let me explain how your neck causes headaches — and what we can do about it.

How Your Neck Causes Headaches

This is the part most people haven’t heard, even from their doctors.

Your upper cervical spine (C1–C3) shares a neurological pathway with the trigeminal nerve — the nerve responsible for sensation in your face and head. This convergence happens in an area called the trigeminocervical nucleus. When joints, muscles, or discs in your upper neck become dysfunctional, they send pain signals that your brain interprets as a headache.

This isn’t theory — it’s well-established neuroscience. Bogduk and Govind published landmark research (Lancet Neurology, 2009) showing that cervicogenic headaches account for up to 20% of all chronic headaches, and that number is likely underdiagnosed because most providers don’t assess for it.

Cervicogenic Headaches

Cervicogenic headaches typically:

  • Start at the base of the skull or upper neck
  • Radiate to one side of the head, often behind the eye
  • Worsen with sustained neck positions (desk work, driving, looking at your phone)
  • Feel like a dull ache with occasional sharp pain
  • Are often accompanied by neck stiffness or reduced range of motion
  • Don’t respond well to typical headache medications

The International Headache Society classifies cervicogenic headache as a secondary headache — meaning it has a structural cause in the neck. This is important because it means the headache itself isn’t the problem. The neck dysfunction is the problem. Treat the neck, and the headaches resolve.

Tension-Type Headaches

Tension headaches are the most common headache type, affecting about 38% of the population according to the Global Burden of Disease studies. They present as:

  • Bilateral (both sides) pressure or tightness
  • A “band-like” sensation around the head
  • Mild to moderate intensity
  • Often worse in the afternoon or evening
  • Associated with stress, poor posture, or sustained positions

Here’s what many clinicians miss: tension headaches and cervicogenic headaches frequently overlap. The upper trapezius, suboccipital muscles, and levator scapulae all refer pain into the head. When these muscles are tight, trigger-point laden, or guarding against underlying joint dysfunction, you get headaches. The Fernández-de-las-Peñas research group has published extensively on this connection (Cephalalgia, 2006), demonstrating that myofascial trigger points in the cervical and shoulder musculature reproduce headache symptoms in the majority of tension-type headache patients.

The McKenzie Cervical Assessment

When you come to my clinic for headaches, the first thing I do is a comprehensive McKenzie Method assessment of your cervical spine. This is different from what most physical therapists do — and it’s why my approach gets results where others haven’t.

What I’m Looking For

During the McKenzie assessment, I’m testing specific repeated movements of your neck — flexion, extension, lateral bending, rotation, and combinations — to identify:

  1. Your directional preference — the specific direction of neck movement that reduces or centralizes your symptoms
  2. Mechanical behavior — does your headache change, move, or resolve with specific positions or movements?
  3. Derangement classification — is the pain being produced by a mechanical displacement in the cervical spine?

This matters because it gives me a specific, testable hypothesis about what’s driving your headaches. It’s not guesswork. If retraction plus extension reduces your headache during the assessment, we have a clear direction for treatment — and you have a self-management tool you can use at home.

A study by Takasaki et al. (Manual Therapy, 2011) found that the McKenzie classification system reliably identified directional preferences in cervical spine patients, and that matching treatment to directional preference produced superior outcomes.

The Retraction Test

One of the most diagnostic movements I use is cervical retraction — essentially, a “chin tuck” done with therapeutic intention. Many headache patients have a forward head posture that loads the upper cervical joints excessively. When I have them retract (pull the head straight back, creating a double chin), two things often happen:

  1. The headache reduces within minutes
  2. Neck range of motion immediately improves

When that happens in the assessment, I know we’re dealing with a derangement — a mechanical problem that responds to mechanical treatment. No medication needed.

Treatment: Manual Therapy + Dry Needling + Exercise

My headache treatment approach combines three evidence-based methods, and the combination is more effective than any one alone.

Manual Therapy

For cervicogenic headaches, I use specific joint mobilizations targeting the upper cervical spine — primarily the C1-2 and C2-3 segments. These are the joints most commonly responsible for headache referral patterns.

Jull et al. (Spine, 2002) conducted a landmark randomized controlled trial showing that manual therapy for cervicogenic headaches reduced headache frequency by 72% and intensity by 43% — with results maintained at 12-month follow-up. This is one of the strongest evidence bases for any headache treatment.

I also work on thoracic spine mobility. When your thoracic spine is stiff (common in desk workers, drivers, and anyone who sits a lot), your cervical spine has to compensate by moving more — particularly in extension. This overloads the upper cervical joints and drives headaches. Improving thoracic mobility takes load off the neck.

Dry Needling for Headaches

Dry needling is one of the most effective tools I have for headache patients. The suboccipital muscles (rectus capitis posterior major and minor, obliquus capitis superior and inferior) are deep, small muscles at the base of the skull that are nearly impossible to release effectively with manual pressure alone.

With dry needling, I can access these muscles directly. The needle creates a local twitch response that resets the muscle’s resting tone and breaks the pain-spasm cycle. For headache patients, this often produces immediate relief — sometimes the first significant relief they’ve had in months.

I also needle the upper trapezius, sternocleidomastoid (SCM), and temporalis muscles when they contain active trigger points referring into the head. A systematic review by France et al. (Journal of Headache and Pain, 2014) found that dry needling significantly reduced headache frequency and intensity in cervicogenic and tension-type headache patients.

Home Exercise Program

The exercises I prescribe depend on your McKenzie classification, but typically include:

  • Cervical retractions — 10 repetitions, 6–8 times daily (especially during desk work)
  • Retraction with extension — if tolerated, to restore upper cervical mobility
  • Deep neck flexor activation — to retrain the stabilizing muscles that support proper head position
  • Thoracic extension over a foam roller — to address the thoracic stiffness feeding into cervical overload
  • Postural awareness strategies — particularly for screen use and driving

The self-management component is critical. I see my headache patients once a week typically, but your headache triggers are happening every day. The exercises give you control between visits.

Common Headache Patterns I Treat

The Desk Worker Headache

This is the most common pattern I see in Salt Lake City. Someone works at a computer for 8+ hours, develops a headache by mid-afternoon that starts in the neck and wraps around to the forehead or temples. They take ibuprofen, it dulls the pain temporarily, and the cycle repeats the next day.

The cause is almost always sustained cervical flexion (forward head posture at the computer) overloading the upper cervical joints. Treatment: McKenzie cervical retractions at the desk every 30 minutes, manual therapy to restore C1-2 mobility, and ergonomic modifications. Most desk worker headache patients are 80% better within 3–4 weeks. For related strategies, see my guide on back pain from sitting.

The Morning Headache

Waking up with a headache usually points to sleeping posture. If you sleep on your stomach or with too many pillows, your cervical spine is held in sustained rotation or flexion all night. I assess whether the headache has a cervical mechanical component and recommend a cervical roll (placed inside the pillowcase) to maintain neutral alignment during sleep.

The Post-Concussion Headache That Won’t Quit

I see patients who had a concussion months ago and still have headaches. Often, the concussion has healed, but the whiplash-type injury to the cervical spine has not been addressed. The neck injury is perpetuating the headaches long after the brain has recovered. A McKenzie cervical assessment and targeted treatment frequently resolves these “post-concussion” headaches.

A Patient Story

I recently treated a woman in her 40s — a project manager who had been dealing with headaches 4–5 days per week for over two years. She’d seen her primary care doctor, a neurologist, and had an MRI of her brain (normal). She was taking sumatriptan regularly and was starting to worry about medication overuse headaches on top of her original headaches.

During her first visit, I assessed her cervical spine and found significantly restricted C1-2 rotation on the right — the same side as her headaches. When I had her do cervical retractions, her current headache reduced from a 6/10 to a 3/10 within five minutes.

Over the next four weeks, I treated her with manual cervical mobilization, dry needling to the right suboccipital muscles and upper trapezius, and a home program of retractions and deep neck flexor exercises. By week three, she was down to one headache per week. By week six, she was essentially headache-free and had stopped taking sumatriptan entirely.

Her exact words: “I can’t believe my neck was causing this the whole time.”

As one of my patients shared in a review: “Dr. Warren identified my back and leg issues within just a few appointments, leading to immediate improvements.” That same thorough assessment approach applies to headaches — finding the actual source, not just managing symptoms.

When Headaches Are NOT Coming From Your Neck

I want to be transparent about the boundaries of physical therapy for headaches. Not all headaches are cervicogenic, and some require medical evaluation. You should see a physician if you experience:

  • Thunderclap headache — the worst headache of your life, sudden onset
  • Headache with fever, stiff neck, and light sensitivity — possible meningitis
  • Headache with neurological symptoms — vision changes, weakness, speech difficulty
  • New headache pattern after age 50
  • Headache that progressively worsens over days/weeks despite treatment

These are red flags that need medical workup. For more on recognizing serious symptoms, review that guide.

For the vast majority of recurring headaches — the ones that have been around for months or years, have normal imaging, and haven’t responded to medication — a cervical spine assessment should be your next step.

FAQ

Can physical therapy really help headaches?

Yes — and the evidence is strong. Cervicogenic headaches and tension-type headaches both respond well to manual therapy, dry needling, and targeted exercise. Multiple randomized controlled trials show physical therapy reducing headache frequency by 50–70% in cervicogenic headache patients.

How do I know if my headache is coming from my neck?

Key signs include: headache triggered or worsened by neck positions, headache starting at the base of the skull and radiating forward, associated neck stiffness, and poor response to typical headache medications. The definitive answer comes from a McKenzie cervical assessment — if neck movements change your headache, your neck is involved.

How many sessions will I need?

Most headache patients see significant improvement within 3–6 sessions. Chronic headaches (present for years) may take 8–10 sessions. I’ll know within the first 1–2 visits whether your headache has a cervical mechanical component and how quickly we can expect improvement.

Is dry needling painful?

For headache treatment, I needle the suboccipital and upper trapezius muscles. You’ll feel a deep ache and possibly a twitch response. Most patients describe it as a “good hurt” — and the relief afterward is often immediate. Learn more about my approach to dry needling in Salt Lake City.

Do I need imaging before starting physical therapy for headaches?

Not typically. If you’ve already had a brain MRI or CT scan that was normal, that’s actually useful information — it tells us the headache is unlikely to be from an intracranial cause, which makes a cervical origin more likely. I can assess and begin treating without imaging in most cases. If I find anything concerning during the examination, I’ll refer you for appropriate imaging.

Why hasn’t my doctor mentioned my neck as a headache cause?

Cervicogenic headaches are underdiagnosed. Most medical training focuses on primary headache disorders (migraine, tension-type) and pharmacological management. The cervical spine assessment required to identify cervicogenic headaches is a specialized skill — it’s what McKenzie-trained physical therapists do every day, but it’s not typically part of a standard medical exam.

Stop Living With Headaches

If you’ve been dealing with chronic headaches in Salt Lake City and nothing has worked, your neck probably hasn’t been properly assessed. That’s exactly what I do — and it’s why patients find answers in my clinic that they haven’t found elsewhere.

Book your headache evaluation online or call/text (385) 332-4939. I offer cash-pay physical therapy — no insurance hassles, no referral required, and full hour-long sessions focused entirely on you.

My clinic is conveniently located in Cottonwood Heights, serving patients from across the Salt Lake Valley.


About the Author

Dr. Emily Warren, DPT, is a McKenzie-certified physical therapist and the owner of Mindful Movement Physical Therapies in Cottonwood Heights, Utah. With over 14 years of clinical experience, she specializes in spine care, headache treatment, dry needling, and helping patients resolve chronic pain without medication or surgery. She is recognized as one of the best physical therapists in Salt Lake City.

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